Conserved uPEP Search
Heatmap Alignment
Help
Enter your query nucleotide sequence:
Choose RefSeq database to search:
Complete
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Settings
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General
Estimate Ka/Ks ratio:
Reference Heatmaps:
Marked Regions:
Region:
to
Description:
+
Alignment Parameters
Nucleotide Match:
Nucleotide Mismatch:
Gap Existence Penalty:
Gap Extension Penalty:
+
Heatmap Generation
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Green
Yellow
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Red
Gradient Options:
Window Size:
Heatmap Width:
Enter your query nucleotide sequence:
Enter your reference nucleotide sequence:
-
Settings
-
General
Draw CDS:
Locate uORFs:
uORF Length:
Codon Minimum
Codon Maximum
Grace Length:
Allow
nucleotides into CDS
Marked Regions:
Region:
to
Description:
+
Alignment Parameters
Nucleotide Match:
Nucleotide Mismatch:
Gap Existence Penalty:
Gap Extension Penalty:
+
Heatmap Generation
Black
Green
Yellow
Orange
Red
Gradient Options:
Window Size:
Heatmap Width:
